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Then how is anything ending up in the build directory?
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Then why do you need a build directory?
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qemu: mkdir build; cd build; ../configure, some projects are like that
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Why can’t the configure script do this?
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You can. But this makes intent clear. If you clone a git repo and see build/ with only a gitkeep, you are safe to bet your life savings on that being the compiled assets dir.
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