No track to JFK can support anything near a 200km/hr train and building a track for such a train is a nonstarter.
Now, the catch there is that this metro isn't going to the airport, it's going _through_ the airport. Even without the airport it would be justifiable, so the airport kind of gets it for free. That's probably the only scenario where you can justify this sort of thing; it would be comically overkill if it was just to serve the airport (it will be able to move 20,000 people per hour per direction, which is... a lot more than the airport can move.)
That said, you'd think something along these lines might be justifiable; as you say, the area surrounding JFK is dense.