Imagine when you throw a tennis ball high in the sky, and then you catch it on your racket without bouncing by matching it's velocity, your feet do the same thing with the ground on a smaller scale.
Nobody actually runs perfectly enough to take 100% of the impact out of your joints but good form routes as much as possible into the muscles/ligaments around the joints instead of straight through them. It's a lot of little bitty unconscious nerve endings and muscles so one could expect it will take a while to iron out for robots.
Thinking about it more, maybe the issue here is that there's no self-healing stretchy ligaments involved in robots to begin with, even before the control issue.