2: You could easily compile Samba yourself for FreeBSD in the past, last time I tried a new version it broke in what I remember being due to linux-isms (yes there is ports, but being reliant on older versions if ports maintainers can't keep up isn't a good thing).
3: The only "fairly basic" stuff that's hugely different is mostly the absence/reliance on shell-scripts (when building), but that has little to do with the actual code function (Personally I often used Node scripts in those scenarios, Python scripts would probably be an improvement since there's no reason it couldn't be everywhere).
I used to use Tremor to decode Ogg audio (no UI needs, just binary data in, arrays of primitive values in audio buffers out), early versions were easy to compile under Windows but building later versions were buried in shell scripts generating headers,etc for no real good reason (maybe to help port when working on a Linux workstation to other embedded devices but made the code less easily compilable by default), the core functionality only really needed a C compiler as early versions showed.
I can agree that something with advanced UI's like Blender (that relies on GL/3d rendering for UI) might not be easily portable, but when algortihm libraries often requires heavy reworking it's not a good thing (Here I think Github has helped since people has had an easier time to contribute, it's a sad thing that people are moving away due to the AI-crap).
In the end, it's not about _actual_ differences but more of a superiority complex of Linux users that is the main roadblock.
How many times have we been told that we're entitled freeloaders for expecting Linux compatibility work from others? Insulted by people who use dominant platforms that get all the commercial support while we get literally nothing? Reduced to reverse engineering stuff with no documentation and zero help?
Pretty wild to watch this unfold. Now that Linux is finally coming out ahead, as it should, because people are finally writing software for it... Suddenly we're the bullies.
Then there's portability between compilers, which, as the article notes, glibc is also completely hostile to (except for anointed compilers) for no good reason whatsoever.