The developer said the agent deployed multiple CloudFormation templates, I'd bet that AWS waived the charges for the unused resources - like EC2 instances that were idle most of the time, very high margin SKUs, etc.
Now, for 100 Gbps of egress (which didn't actually happen) - and this is grounded speculation - I don't think that AWS would give a discount that is greater than CloudFront rates.
100 Gbps is A LOT of data.