I still hack on the engine and its derivations from time to time.
Quake 2 was a development of that, will a deep focus on multiplayer. And it won at that. As a singlr player game it was boring but LAN play was just amazing.
So quake 3 did rethink the engine but went all in on multiplayer.
As funny as it may sound but in the end, it is quake 1 that just keeps going thanks to its easy moddabilty.