Whether the popularity of the MS ecosystem is good or not is a separate problem. If we are solving for "make the business go well and I get paid more", the strategy is usually obvious. We can still advocate for OSS and not-so-many-eggs in the Microsoft basket while we get paid for using these technologies. Again, SQLite is the preferred engine in my tool belt. I don't want to have to manage a hosted sql machine. But, sometimes the problem absolutely insists upon it.
Also, if you are using C#/.NET, integrating with MSSQL is always a little bit easier than the other providers. SQLite (and some others) have lackluster types for things like time. MSSQL has DateTime2 and DateTimeOffset that map exactly into the CLR types.