What's the alternative? Proprietary closed-source operating systems owned by corps who can be compelled to insert covert backdoors?
If BSD was as popular as Linux it would have the exact same problems.
TempleOS is the only thing that comes to mind that doesn't fit your description and it's not practically useful.
Any sufficiently large codebase is a mix of ideas and concepts implemented by different people with different priorities over a large timespan and if you can fit the entire thing in your head it's not very interesting or complex.
Something like disk encryption would be immediately visible.
So you don't have this mess of 80 different distros with 60 different versions of systemd, 20 that don't use it, a million kernel versions and it's all thrown together in a Costco-sized trash bag and we call the output "Linux".