ML-KEM is not new. It's hardness is based on MLWE. LWE (a slightly harder problem) has been around for 20 years. Attacks against it stablized to be 2^{cn} time maybe 15 years ago. The value of c has been stable for nearly 10 years.
MLWE is mildly different, but still from > 1 decade ago. The only improved attacks are ~8x faster (and they are relatively naive). It has been a very popular cryptanalytic target since it was suggested (LWE has been dominating cryptography for the last >10 years).
It does not add negligible cost in all settings. In hardware, a hybrid scheme requires an implementation of SHA2 and SHA3. This is expensive.
Any good design must not do fine when even the worst happens. When we did the AES competition, we did not combine AES with DES (or 3DES) in case AES was weak.
This is beside the point though. Most cryptographers would still recommend the hybrid over pure ML-KEM. This RFC (for pure MLKEM) is marked "recommended to implement = N". It is purely for settings where the implementors independently want to use pure ML-KEM for some reason. In these settings, they should implement it against some standard, so it is interoperable.