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Possible reasons:

- No waiting for a page to load

- Home screen access (most don't know about bookmarking web apps)

- Discovery (where do you go to find PWAs?)

- Features (native apps have access to more platform APIs)

- Absence of browser chrome (more immersive UX), though on iOS the chrome can be removed from PWAs once bookmarked, using meta tags

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Those are all pretty good. Some other reasons:

- well written apps use less memory, battery, and bandwidth

- security: apps go through at least some review while a web app could change with every reload

- scripting: apps often expose more functionality to Apple Shortcuts

- accessibility: the system accessibility features seem to work better with apps

- UI/UX: the best native apps are always going to be more responsive and feel better than the best web apps

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In most of the cases, web apps are also much slower as well and the UX is also sub par.
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