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My experience has been reasonably consistent. My main DE is KDE, it switches between light and dark based on my location and time. It switches to warmer colors at night. I have never had a problem in the applications I use. I occasionally switch on the fancy effects like windows fall apart when I'm in the fun mode, or I'm showing something to friends, as a bit of fun makes everything more interesting, and all work perfectly well.
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   > If you set light mode, you'll get some light gray text on lighter gray background somewhere, but if you use dark mode, then you'll get some black text rendered on a black background elsewhere.
I've been using Linux (Linux Mint Cinammon, then Fedora Linux GNOME) for over five years and I've never had that. What kind of desktop environment, themes and applications are you using?
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