If you look past conventional terminology, an organ really a single instrument in a similar way as a multi-input and multi-output synthesizer is a single instrument today — the difference is more that even a modern organ generally encodes most of the technology limitations of Bach’s time, whereas a computer-based synthesizer’s additional sound flexibility reflects the broader technology capabilities of our current times.
I had the pleasure of working with an amazing organist in my time at Holy Name Cathedral (he’s apparently since become semi-retired, just doing occasional fill-in work). Watching him do a Messiaen organ piece as a postlude after Mass it was like seeing video of Keith Moon on the drums. Limbs moving in a seemingly chaotic manner and yet music came out the other end (on top of crazy multi-manual keyboarding and pedalwork, he was also frequently changing the stops on the organ as he played).
While the entire video is fun, the link is cued up to a place where there's a lot going on, but it's slow enough that you can kind of see what he's doing. Watch his knees to see what he's doing with pedals. Notice that his hands seem to be going in cycles, but there are subtle variations in the cycles.
At 8:54, strobe lights start up - that can't make it simpler to keep this focus. What he's doing looks essentially impossible to me, but I'm well aware that I don't know enough to understand just how insanely difficult it really is.