Many of those are traditions or ritual behaviors that decrease the chance of poisoning, sometimes subtle chronic poisoning rather than obvious acute poisoning.
Interestingly, I think the rest of your comment supports exactly the opposite message. Traditional food preparation is the way it is for excellent reasons, that's true.
And what's also true is that you have absolutely no hope of determining what those reasons are. You can mess around and see if you get problems. But if you don't do that, you'll never have any idea what's behind the traditions. Investigating the question before messing around would be a gigantic waste of time and effort.