Plenty of certification bodies refuse to revoke their given certifications because of brand damage or effects on their customers. That's why cryptographic verification of things like Secure Boot are basically broken on most systems by default.
If an independent security researcher does it and Apple rolls out fixes a month later, I can see it happening. If it turns out a government agency hacked the platform "at some point", I have my doubts Apple will retroactively reject all of their iPhones' signatures.