You just have to go through a ton of all of a model's neurons and identify the associated motif, then use that model as a research model to figure out how to tune out bad behavior.
It's pretty hard to imagine today's models subtly recognizing a motif for bad behavior in the research model and then lying about it. Or lying about the results of an alignment training run. It's possible, I guess, but it seems unlikely, and I don't really think there's any evidence of current models having that variety of misalignment.