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Because the motherboard is tiny and on the left?
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So presumably the small headphone jack is on a daughter board which could just as easily carry a USB 2 signal.
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plenty of laptops run cables internally to device ports.
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I think the charitable read is that Apple wants to minimize confusion by ensuring all usb ports on the device have the same capabilities. A simple USB 2.0 port would be cheap but supporting charging and thunderbolt would add meaningful cost.

edit: NVM lol, the Neo only has one fully featured USB port

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they do it so that you'll buy a MacBook Pro
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